Stem-loop stu-MIR7984c

Accession

MI0025770

Description

Solanum tuberosum stu-MIR7984c precursor miRNA

Literature search

1 open access papers mention stu-MIR7984c
(1 sentences)

Sequence

17607 reads, 618.0 reads per million, 83 experiments

acgauaccaaacuuuaugaaggaccuuuuauucccugcacuauuuaauaguguauuuuAAAGGUAUAUAUGUGCCCACGUagacaucauaaaaauugcaucauuauaaauaguaauguauccacgugggcacauauauaccuuuaaaauacacuauuaaauagugcagggaauaaaagguccuucAUAAAGUUUGGUAUCGUAA
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((............(((((.((((....)))).))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..

Structure

--                                                                                a  caucauaaaaau     c    u 
  acgauaccaaacuuuaugaaggaccuuuuauucccugcacuauuuaauaguguauuuuAAAGGUAUAUAUGUGCCCACGU ga            ugcau auua a
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||| ||||  
  UGCUAUGGUUUGAAAUAcuuccuggaaaauaagggacgugauaaauuaucacauaaaauuuccauauauacacgggugca cu            augua ugau a
AA                                                                                c  ------------     a    a 

Annotation confidence Low

Genome context

JH138777.1: 6817-7020 [-]

Mature stu-miR7984c-5p

• Accession: MIMAT0030861
• Description: Solanum tuberosum stu-miR7984c-5p mature miRNA
• Sequence: 59 - AAAGGUAUAUAUGUGCCCACGU - 80
• Evidence: experimental ; Illumina [1]

Mature stu-miR7984c-3p

• Accession: MIMAT0031185
• Description: Solanum tuberosum stu-miR7984c-3p mature miRNA
• Sequence: 186 - AUAAAGUUUGGUAUCGUAA - 204
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233