Stem-loop stu-MIR1886c

Accession

MI0025780

Description

Solanum tuberosum stu-MIR1886c precursor miRNA

Literature search

2 open access papers mention stu-MIR1886c
(3 sentences)

Sequence

10593 reads, 278.0 reads per million, 83 experiments

AUGGUAUCGUGAGAUGAAAUCAGCguuuggacaugcgauuuuacgcugAUUUCAUCUCAUGAUUCCAUAU
((((.((((((((((((((((((((((((......)))....))))))))))))))))))))).))))..

Structure

--    U                     ----   ga 
  AUGG AUCGUGAGAUGAAAUCAGCgu    uug  c
  |||| |||||||||||||||||||||    |||   
  UACC UAGUACUCUACUUUAgucgca    agc  a
UA    U                     uuuu   gu 

Annotation confidence Medium

Genome context

JH137832.1: 2129719-2129788 [+]

Mature stu-miR1886c-5p

• Accession: MIMAT0030871
• Description: Solanum tuberosum stu-miR1886c-5p mature miRNA
• Sequence: 1 - AUGGUAUCGUGAGAUGAAAUCAGC - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR1886c-3p

• Accession: MIMAT0058194
• Description: Solanum tuberosum stu-miR1886c-3p mature miRNA
• Sequence: 49 - AUUUCAUCUCAUGAUUCCAUAU - 70
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233