miRBase entry: stu-MIR7993a

Stem-loop stu-MIR7993a


Accession
MI0025784
Description
Solanum tuberosum stu-MIR7993a precursor miRNA


Sequence

493 reads, 19.0 reads per million, 69 experiments
uuaaguuaauuauauaagauauaucauuuuuuuuaaaauuauacgcgcAUUCAUCUCAAUAAACUGUAAAGCcccauaauuuuucauuugagguugaugcauauaauuaagagaugauAUAUUUUAUGUGGUUAACUUAACU
((((((((((((((((((((((((((((((((....(((((((...(((((.(((((((............................))))))).))))).)))))))))))))))))))))))))))))))))))))))..

Structure
--                                uuaa       cgc     C       UAAACUGUAAAGC 
  uuaaguuaauuauauaagauauaucauuuuuu    aauuaua   gcAUU AUCUCAA             c
  ||||||||||||||||||||||||||||||||    |||||||   ||||| |||||||              
  AAUUCAAUUGGUGUAUUUUAUAuaguagagaa    uuaauau   cguag uggaguu             c
UC                                ----       --a     u       uacuuuuuaauac 


Annotation confidence Low
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Genome context
JH137845.1: 1002915-1003056 [+]

Database links

Mature stu-miR7993a-5p

Accession MIMAT0058198
Description Solanum tuberosum stu-miR7993a-5p mature miRNA
Sequence 49 - AUUCAUCUCAAUAAACUGUAAAGC - 72
Evidence experimental
unknown

Mature stu-miR7993a-3p

Accession MIMAT0030875
Description Solanum tuberosum stu-miR7993a-3p mature miRNA
Sequence 119 - AUAUUUUAUGUGGUUAACUUAACU - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233