miRBase entry: stu-MIR7993c

Stem-loop stu-MIR7993c


Accession
MI0025786
Description
Solanum tuberosum stu-MIR7993c precursor miRNA


Sequence

570 reads, 21.0 reads per million, 70 experiments
uuaaguuaaccauauaaaauauguuCUCCUUUAAUUAUAUGCAUCAaccucaaguugaaaauaucuuaaguuuuugcggcuuauuaaggugaaugcauagaauuaaaggagaugacauAUAUUUUAUGUGGUUAACUUAACU
((((((((((((((((((((((((((((((((((((.(((((((..((((.((((((((((..........)))).))))))....))))..))))))).))))))))))))....))))))))))))))))))))))))..

Structure
--                        ----            A       CA    ---c      -    uauc 
  uuaaguuaaccauauaaaauaugu    uCUCCUUUAAUU UAUGCAU  accu    aaguug aaaa    u
  ||||||||||||||||||||||||    |||||||||||| |||||||  ||||    |||||| ||||     
  AAUUCAAUUGGUGUAUUUUAUAua    agaggaaauuaa auacgua  ugga    uucggc uuuu    u
UC                        cagu            g       ag    auua      g    ugaa 


Annotation confidence Low
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Genome context
JH138039.1: 449268-449409 [+]

Database links

Mature stu-miR7993c-5p

Accession MIMAT0058199
Description Solanum tuberosum stu-miR7993c-5p mature miRNA
Sequence 26 - CUCCUUUAAUUAUAUGCAUCA - 46
Evidence experimental
unknown

Mature stu-miR7993c-3p

Accession MIMAT0030877
Description Solanum tuberosum stu-miR7993c-3p mature miRNA
Sequence 119 - AUAUUUUAUGUGGUUAACUUAACU - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233