Stem-loop stu-MIR7993d

Accession

MI0025787

Description

Solanum tuberosum stu-MIR7993d precursor miRNA

Sequence

548 reads, 18.0 reads per million, 70 experiments

uuaaguuaaccauauaaaauauguucucCUUUAAUUAUAUGCAUCAAccucaaguugaaaacaucuuaaguuuuugcggcuuauuaaggugaaugcauagacuuaaaggagaugacauAUAUUUUAUGUGGUUAACUUAACU
((((((((((((((((((((((((((((((((((...(((((((..((((.(((((((((((.......)))))..))))))....))))..)))))))...))))))))))....))))))))))))))))))))))))..

Structure

--                        ----          UUA       CA    ---c      --     au 
  uuaaguuaaccauauaaaauaugu    ucucCUUUAA   UAUGCAU  Accu    aaguug  aaaac  c
  ||||||||||||||||||||||||    ||||||||||   |||||||  ||||    ||||||  |||||  u
  AAUUCAAUUGGUGUAUUUUAUAua    agaggaaauu   auacgua  ugga    uucggc  uuuug  u
UC                        cagu          cag       ag    auua      gu     aa 

Annotation confidence Low

Genome context

JH138039.1: 571859-572000 [+]

Mature stu-miR7993d-5p

• Accession: MIMAT0058200
• Description: Solanum tuberosum stu-miR7993d-5p mature miRNA
• Sequence: 29 - CUUUAAUUAUAUGCAUCAA - 47
• Evidence: experimental ; unknown

Mature stu-miR7993d-3p

• Accession: MIMAT0030878
• Description: Solanum tuberosum stu-miR7993d-3p mature miRNA
• Sequence: 119 - AUAUUUUAUGUGGUUAACUUAACU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233