miRBase entry: stu-MIR7995

Stem-loop stu-MIR7995


Accession
MI0025790
Description
Solanum tuberosum stu-MIR7995 precursor miRNA


Sequence

526 reads, 16.0 reads per million, 65 experiments
UUACACGUAGACAAGUUGACCAUUuaaaauaagacgacuccuuuaauuauacacaugagguuuuauggcuuaugaaacuaaggaguauaauuaaaggaggugaaauuuuuuaaaugguuuaACUUGUCUACGUAUAAUG
(((.(((((((((((((((((((((((((........(((((((((((((((...(..(((((((((...)))))))))..)..)))))))))))))))........)))))))))).))))))))))))))).)))..

Structure
--   C               -          uaagacga               aca ga         g 
  UUA ACGUAGACAAGUUGA CCAUUuaaaa        cuccuuuaauuauac   u  gguuuuaug  
  ||| ||||||||||||||| ||||||||||        |||||||||||||||   |  ||||||||| c
  AAU UGCAUCUGUUCAauu gguaaauuuu        gaggaaauuaauaug   g  ucaaaguau  
GU   A               u          uuaaagug               -ag aa         u 


Annotation confidence High
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Genome context
JH137859.1: 1318266-1318404 [+]

Database links

Mature stu-miR7995-5p

Accession MIMAT0030881
Description Solanum tuberosum stu-miR7995-5p mature miRNA
Sequence 1 - UUACACGUAGACAAGUUGACCAUU - 24
Evidence experimental
Illumina [1]

Mature stu-miR7995-3p

Accession MIMAT0058202
Description Solanum tuberosum stu-miR7995-3p mature miRNA
Sequence 122 - ACUUGUCUACGUAUAAUG - 139
Evidence experimental
unknown

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233