Stem-loop stu-MIR7996b

Accession

MI0025792

Description

Solanum tuberosum stu-MIR7996b precursor miRNA

Sequence

3249 reads, 123.0 reads per million, 77 experiments

AUGUGGUACAUAUGAAAUUUGAAAuuaaucaauuuuuuaguauguuuuuauauauuuuaaguugcuaauuauuuguauuuagaguauguuuuacguaaauauauuagaaaucacaauaauuaacaaguuaauauaaaaaaaaacuuauaaaaaauucauugacuuuugaaAUUUCAUUUGUAUCACAUAA
((((((((((.(((((((((.((((((((.(((((((((....((((((...(((.((((.(((.((((((((.((((((..(((((((((.....)))))))))..)))).)))))))))).))).)))).)))...))))))...))))))))).)))))..))).))))))))).))))))))))..

Structure

--          U         G   --     c         guau      aua   u    g   c        u  -    ag         u 
  AUGUGGUACA AUGAAAUUU AAA  uuaau aauuuuuua    guuuuu   uau uuaa uug uaauuauu gu auuu  aguauguuu a
  |||||||||| ||||||||| |||  ||||| |||||||||    ||||||   ||| |||| ||| |||||||| || ||||  ||||||||| c
  UACACUAUGU UACUUUAaa uuu  aguua uuaaaaaau    caaaaa   aua aauu aac auuaauaa ca uaaa  uuauauaaa g
AA          U         g   uc     c         -auu      aaa   u    g   a        -  c    ga         u 

Annotation confidence High

Genome context

JH137822.1: 2556836-2557025 [+]

Mature stu-miR7996b-5p

• Accession: MIMAT0030883
• Description: Solanum tuberosum stu-miR7996b-5p mature miRNA
• Sequence: 1 - AUGUGGUACAUAUGAAAUUUGAAA - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR7996b-3p

• Accession: MIMAT0058204
• Description: Solanum tuberosum stu-miR7996b-3p mature miRNA
• Sequence: 171 - AUUUCAUUUGUAUCACAUAA - 190
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233