Stem-loop stu-MIR7996c

Accession

MI0025793

Description

Solanum tuberosum stu-MIR7996c precursor miRNA

Literature search

1 open access papers mention stu-MIR7996c
(1 sentences)

Sequence

3242 reads, 121.0 reads per million, 78 experiments

AUGUGGUACAUAUGAAAUUUGAAAuuaaucaauuuuuuaguuuguuuuuauauauuuuaaguugcuaauuauuuguauuuagaguauguuuuacguaaauauauuagaaaucacaauaauuaacaaguuaauauaaaaaaaaacuuauaaaaaauucauugacuuuugaaAUUUCAUUUGUAUCACAUAA
((((((((((.(((((((((.((((((((.(((((((((((((.(((((((((....(((.(((.((((((((.((((((..(((((((((.....)))))))))..)))).)))))))))).))).)))))))))))).)))))...)))))))).)))))..))).))))))))).))))))))))..

Structure

--          U         G   --     c        ---     g         auuu   g   c        u  -    ag         u 
  AUGUGGUACA AUGAAAUUU AAA  uuaau aauuuuuu   aguuu uuuuuauau    uaa uug uaauuauu gu auuu  aguauguuu a
  |||||||||| ||||||||| |||  ||||| ||||||||   ||||| |||||||||    ||| ||| |||||||| || ||||  ||||||||| c
  UACACUAUGU UACUUUAaa uuu  aguua uuaaaaaa   ucaaa aaaaauaua    auu aac auuaauaa ca uaaa  uuauauaaa g
AA          U         g   uc     c        uau     a         ----   g   a        -  c    ga         u 

Annotation confidence High

Genome context

JH138313.1: 61352-61541 [+]

Mature stu-miR7996c-5p

• Accession: MIMAT0030884
• Description: Solanum tuberosum stu-miR7996c-5p mature miRNA
• Sequence: 1 - AUGUGGUACAUAUGAAAUUUGAAA - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR7996c-3p

• Accession: MIMAT0058205
• Description: Solanum tuberosum stu-miR7996c-3p mature miRNA
• Sequence: 171 - AUUUCAUUUGUAUCACAUAA - 190
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233