Stem-loop stu-MIR7997b

Accession

MI0025795

Description

Solanum tuberosum stu-MIR7997b precursor miRNA

Literature search

1 open access papers mention stu-MIR7997b
(6 sentences)

Sequence

2750 reads, 88.0 reads per million, 80 experiments

AUGCUGCUCGGACUCUUCAAAaaugucagugggugcgugcuggauucuccaaaggaguguauuuuuggagaauuugacauggguauGACAUCAAAAGUGAAGAGccagcacaacuuag
.((.((((.((.(((((((...((((((.....(.((((.((((((((((((((........)))))))))))))).)))).)..))))))......)))))))))))))))......

Structure

-----A  C    C  A       ---AAa      guggg g    c              gag 
      UG UGCU GG CUCUUCA      auguca     u cgug uggauucuccaaag   u
      || |||| || |||||||      ||||||     | |||| ||||||||||||||    
      ac acga cc GAGAAGU      UACAGu     g guac guuuaagagguuuu   g
gauuca  -    -  -       GAAAAC      ---au g    a              uau 

Annotation confidence Low

Genome context

JH137797.1: 3479983-3480100 [+]

Mature stu-miR7997b-5p

• Accession: MIMAT0030886
• Description: Solanum tuberosum stu-miR7997b-5p mature miRNA
• Sequence: 1 - AUGCUGCUCGGACUCUUCAAA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR7997b-3p

• Accession: MIMAT0058206
• Description: Solanum tuberosum stu-miR7997b-3p mature miRNA
• Sequence: 87 - GACAUCAAAAGUGAAGAG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233