miRBase entry: stu-MIR7997c

Stem-loop stu-MIR7997c


Accession
MI0025796
Description
Solanum tuberosum stu-MIR7997c precursor miRNA


Sequence

6521 reads, 239.0 reads per million, 83 experiments
AUAUUGCUCGGACUCUUCAAAAAUguugauagaugcaugucaaaucuucuaaaaaguagugcauuuuuggaagauucuacacuaauauggcaauauuUUUGGAGAGUCCGAGCAACauuu
...(((((((((((((((((((((((((....((...(((..(((((((((((((........)))))))))))))..)))...))....))))))))))))))))))))))))).....

Structure
--AUA                         auag  gca   ca             gua 
     UUGCUCGGACUCUUCAAAAAUguug    au   ugu  aaucuucuaaaaa   g
     |||||||||||||||||||||||||    ||   |||  |||||||||||||    
     AACGAGCCUGAGAGGUUUuuauaac    ua   aca  uuagaagguuuuu   u
uuuaC                         ggua  auc   uc             acg 


Annotation confidence Low
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Genome context
JH137863.1: 266441-266560 [+]

Database links

Mature stu-miR7997c-5p

Accession MIMAT0030887
Description Solanum tuberosum stu-miR7997c-5p mature miRNA
Sequence 1 - AUAUUGCUCGGACUCUUCAAAAAU - 24
Evidence experimental
Illumina [1]

Mature stu-miR7997c-3p

Accession MIMAT0058207
Description Solanum tuberosum stu-miR7997c-3p mature miRNA
Sequence 98 - UUUGGAGAGUCCGAGCAAC - 116
Evidence experimental
unknown

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233