Stem-loop stu-MIR8000

Accession

MI0025799

Description

Solanum tuberosum stu-MIR8000 precursor miRNA

Literature search

1 open access papers mention stu-MIR8000
(8 sentences)

Sequence

535 reads, 17.0 reads per million, 69 experiments

ACACCGAAGAACUGACACCGAAGAaccaaauuuuuucggUUCGGUUUUUCGGUAUUU
..(((((((((((((.(((((((((......))))))))))))))))))))))....

Structure

--AC             C         cc 
    ACCGAAGAACUGA ACCGAAGAa  a
    ||||||||||||| |||||||||   
    UGGCUUUUUGGCU Uggcuuuuu  a
UUUA             -         ua 

Annotation confidence Low

Genome context

JH137869.1: 279923-279979 [+]

Mature stu-miR8000-5p

• Accession: MIMAT0030890
• Description: Solanum tuberosum stu-miR8000-5p mature miRNA
• Sequence: 1 - ACACCGAAGAACUGACACCGAAGA - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR8000-3p

• Accession: MIMAT0058208
• Description: Solanum tuberosum stu-miR8000-3p mature miRNA
• Sequence: 40 - UUCGGUUUUUCGGUAUUU - 57
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233