Stem-loop stu-MIR8005a

Accession

MI0025804

Description

Solanum tuberosum stu-MIR8005a precursor miRNA

Sequence

3111 reads, 128.0 reads per million, 80 experiments

UUUAGAGUUUAAGGUUUAGAGUUUaagguuugggguuuaggguuuaggguuaagaguaucaugguuaggguuuaggguuuagggguuaggauauagggUUUAGGAUUUAGGGUUUAGaguuuagggu
((((((.((((((.((((((.((((((.((((...(((((...(((((.((.(((.(...........).))).)).)))))...)))))...)))).)))))).)))))).)))))).))))))..

Structure

--      G      G      G      g    ggg     ggu     g  a   g auca 
  UUUAGA UUUAAG UUUAGA UUUaag uuug   uuuag   uuagg uu aga u    u
  |||||| |||||| |||||| |||||| ||||   |||||   ||||| || ||| |    g
  ggauuu aGAUUU GGAUUU GGAUUU ggau   ggauu   gauuu gg uuu g    g
ug      g      G      A      g    aua     ggg     g  a   g gauu 

Annotation confidence Low

Genome context

JH137905.1: 1478170-1478296 [+]

Mature stu-miR8005a-5p

• Accession: MIMAT0030895
• Description: Solanum tuberosum stu-miR8005a-5p mature miRNA
• Sequence: 1 - UUUAGAGUUUAAGGUUUAGAGUUU - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR8005a-3p

• Accession: MIMAT0058210
• Description: Solanum tuberosum stu-miR8005a-3p mature miRNA
• Sequence: 99 - UUUAGGAUUUAGGGUUUAG - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233