miRBase entry: stu-MIR8005b

Stem-loop stu-MIR8005b


Accession
MI0025805
Description
Solanum tuberosum stu-MIR8005b precursor miRNA


Sequence

375 reads, 12.0 reads per million, 65 experiments
acucuaAAUUUUAAAUUCUAAAUCuaaaauaguaaaucauaaaucauaaauuuuaggauuuaaguuuuuaugauuuaaguuuuaugguuuaAGGUUUAGAGUUUAAGGUUUAGAGUuu
(((((((((((((((((((((((((.((((.(((((.(.(((((((((((.((((.....))))..))))))))))).).))))).)))).)))))))))))))))))))))))))..

Structure
--                         a    a     u a           -u    g 
  acucuaAAUUUUAAAUUCUAAAUCu aaau guaaa c uaaaucauaaa  uuua g
  ||||||||||||||||||||||||| |||| ||||| | |||||||||||  |||| a
  UGAGAUUUGGAAUUUGAGAUUUGGA uuug uauuu g auuuaguauuu  gaau u
uu                         a    g     u a           uu    u 


Annotation confidence Low
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Genome context
JH137959.1: 260188-260305 [-]

Database links

Mature stu-miR8005b-5p

Accession MIMAT0031191
Description Solanum tuberosum stu-miR8005b-5p mature miRNA
Sequence 7 - AAUUUUAAAUUCUAAAUC - 24
Evidence experimental
Illumina [1]

Mature stu-miR8005b-3p

Accession MIMAT0030896
Description Solanum tuberosum stu-miR8005b-3p mature miRNA
Sequence 92 - AGGUUUAGAGUUUAAGGUUUAGAGU - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233