Stem-loop stu-MIR8006

Accession

MI0025807

Description

Solanum tuberosum stu-MIR8006 precursor miRNA

Literature search

1 open access papers mention stu-MIR8006
(6 sentences)

Sequence

52988 reads, 1309.0 reads per million, 83 experiments

uaguuuuuggacgacaggggcaccaaugucccaaaaguaugacggaggguaucugcAUACCAUUUACGAUAGUUCGGggguauauuuauccuuuuuccuauuauuauuuuauaaagggaaaaaggacaaauauacccuuaaacuaucauaaaugguauguAGAUACCCUCUGUCAUACUUUUGagacauuggugcccugccguccaaaaaauaga
...((((((((((.(((((.((((((((((.(((((((((((((((((((((((((((((((((((.(((((((.((((((((((((.(((((((((((.((((......)))).))))))))))).)))))))))))).))))))).))))))))))))))))))))))))))))))))))).))))))))))))))).)))))))))).....

Structure

--uag          a     g          c                                   C       C            a           a    ua 
     uuuuuggacg caggg caccaauguc caaaaguaugacggaggguaucugcAUACCAUUUA GAUAGUU GGggguauauuu uccuuuuuccu uuau  u
     |||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||   
     aaaaaccugc guccc gugguuacag GUUUUCAUACUGUCUCCCAUAGAuguaugguaaau cuaucaa uucccauauaaa aggaaaaaggg aaua  u
agaua          c     -          a                                   a       a            c           a    uu 

Annotation confidence Low

Genome context

JH137916.1: 947302-947516 [+]

Mature stu-miR8006-5p

• Accession: MIMAT0030898
• Description: Solanum tuberosum stu-miR8006-5p mature miRNA
• Sequence: 57 - AUACCAUUUACGAUAGUUCGG - 77
• Evidence: experimental ; Illumina [1]

Mature stu-miR8006-3p

• Accession: MIMAT0031192
• Description: Solanum tuberosum stu-miR8006-3p mature miRNA
• Sequence: 161 - AGAUACCCUCUGUCAUACUUUUG - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233