Stem-loop stu-MIR8007a

Accession

MI0025808

Description

Solanum tuberosum stu-MIR8007a precursor miRNA

Literature search

3 open access papers mention stu-MIR8007a
(4 sentences)

Sequence

30309 reads, 909.0 reads per million, 81 experiments

AUGUGGCACUUUUCGGAUUUugagauuuaaacaagucuaacuuugacuguaaauuuuucauagaucuuuuaaacauuuugaauuaucaauauuugugaauuauaguacuuuuuacguaguuuacaaauauacaaauuuuauuucaaaaaaaauugaucauuucaugcguaaauuucuagccaaacuuAAACUGUUUGACUCUCGAAAAaugaaaagugccacauaa
(((((((((((((((..((((((((.(((((((.((.(((.((((.(((.((((((..(((((((..((......(((((((.((...(((((((((((((((.(((.....))))))))))))))))))........)).)))))))......))..)))).)))...)))))).))).)))).))).))))))))).))))))))..)))))))))))))))..

Structure

--               GA        u       a  c   c    a   u      -uu   -    cu  uaaaca       u  -----uca               a   c 
  AUGUGGCACUUUUCG  UUUugaga uuaaaca gu uaa uuug cug aaauuu   cau agau  uu      uuuugaa ua        auauuugugaauuau gua u
  |||||||||||||||  |||||||| ||||||| || ||| |||| ||| ||||||   ||| ||||  ||      ||||||| ||        ||||||||||||||| ||| u
  uacaccgugaaaagu  AAAGCUCU AGUUUGU CA Auu aaac gau uuuaaa   gua uuua  ag      aaaacuu au        uauaaacauuugaug cau u
aa               aA        C       -  A   c    c   c      ugc   c    cu  uuaaaa       u  uuuaaaca               -   u 

Annotation confidence Low

Genome context

JH137932.1: 818593-818818 [+]

Mature stu-miR8007a-5p

• Accession: MIMAT0030899
• Description: Solanum tuberosum stu-miR8007a-5p mature miRNA
• Sequence: 1 - AUGUGGCACUUUUCGGAUUU - 20
• Evidence: experimental ; Illumina [1]

Mature stu-miR8007a-3p

• Accession: MIMAT0031193
• Description: Solanum tuberosum stu-miR8007a-3p mature miRNA
• Sequence: 188 - AAACUGUUUGACUCUCGAAAA - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233