Stem-loop stu-MIR8010

Accession

MI0025815

Description

Solanum tuberosum stu-MIR8010 precursor miRNA

Sequence

1053 reads, 44.0 reads per million, 77 experiments

cuAAAUUUAACUAGGGUCCUAcuagcuaccuuaaauuauuuuaaaauaaaauaaauacaccauaaaaauugauguggcauagaaaaugugcacuugccuucaagagagugugcacauuuucuaugccacaucaauuuuuaugguguauuuauuucauuuuaaaauuguuuaagguggcuaAUAGGACCCUAGUUAAAUUUAGGU
(((((((((((((((((((((.((((((((((((((.((((((((((.(((((((((((((((((((((((((((((((((((((((((((((..(((((...))).))))))))))))))))))))))))))))))))))))))))))))))).)))))))))).)))))))))))))).)))))))))))))))))))))..

Structure

--                     c              u          a                                             uu  -   c 
  cuAAAUUUAACUAGGGUCCUA uagcuaccuuaaau auuuuaaaau aaauaaauacaccauaaaaauugauguggcauagaaaaugugcac  gc cuu  
  ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  || ||| a
  GAUUUAAAUUGAUCCCAGGAU aucgguggaauuug uaaaauuuua uuuauuuaugugguauuuuuaacuacaccguaucuuuuacacgug  ug gag  
UG                     A              u          c                                             --  a   a 

Annotation confidence Low

Genome context

JH137951.1: 1337093-1337296 [+]

Mature stu-miR8010-5p

• Accession: MIMAT0058212
• Description: Solanum tuberosum stu-miR8010-5p mature miRNA
• Sequence: 3 - AAAUUUAACUAGGGUCCUA - 21
• Evidence: experimental ; unknown

Mature stu-miR8010-3p

• Accession: MIMAT0030906
• Description: Solanum tuberosum stu-miR8010-3p mature miRNA
• Sequence: 181 - AUAGGACCCUAGUUAAAUUUAGGU - 204
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233