Stem-loop stu-MIR8011a

Accession

MI0025816

Description

Solanum tuberosum stu-MIR8011a precursor miRNA

Literature search

2 open access papers mention stu-MIR8011a
(7 sentences)

Sequence

5366 reads, 154.0 reads per million, 73 experiments

UUGUGUGAGGUUUCUUUUUGUUUCacaaagcagagcgacccaaaucuuccucuuuggguccaccaacuugUGAAAUAAAAAGAAGCCUCACACAacu
((((((((((((((((((((((((((((......(.((((((((........)))))))))......))))))))))))))))))))))))))))..

Structure

--                            agcaga c        ucu 
  UUGUGUGAGGUUUCUUUUUGUUUCacaa      g gacccaaa   u
  ||||||||||||||||||||||||||||      | ||||||||    
  aACACACUCCGAAGAAAAAUAAAGUguu      c cuggguuu   c
uc                            caacca -        cuc 

Annotation confidence Low

Genome context

JH137959.1: 709134-709230 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR8011a

Mature stu-miR8011a-5p

• Accession: MIMAT0031195
• Description: Solanum tuberosum stu-miR8011a-5p mature miRNA
• Sequence: 1 - UUGUGUGAGGUUUCUUUUUGUUUC - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR8011a-3p

• Accession: MIMAT0030907
• Description: Solanum tuberosum stu-miR8011a-3p mature miRNA
• Sequence: 71 - UGAAAUAAAAAGAAGCCUCACACA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233