Stem-loop stu-MIR8007b

Accession

MI0025820

Description

Solanum tuberosum stu-MIR8007b precursor miRNA

Literature search

2 open access papers mention stu-MIR8007b
(2 sentences)

Sequence

35382 reads, 1035.0 reads per million, 81 experiments

augugacacuuuuugaauuucgagAUUCAAACAAGUCUAUCUUUGACCguaaauuuuucauacaucuuuuuaauauuuuguguuguugugacuuauaguacuuuuuauguaguuuauaaauauauaaauuucauuucaaaaaaauuaaagauuacauggguaaauuaucggucaaacuuAAACUGUUUGACUCUCGAAAAaugaaaaguaccacauaa
(((((..(((((((...((((((((.(((((((.((.((..((((((((..((((((((((..((((((.......(((((((..(((((((((((((......))))).)).))))))..)))))))..................))))))...))))).)))))..))))))))..)).))))))))).))))))))...)))))))..)))))..

Structure

--     ac       gaa        U       A  C  UC        ua     -     -ac      -----------uuaauau       ug      -  -     ua 
  augug  acuuuuu   uuucgagA UCAAACA GU UA  UUUGACCg  aauuu uucau   aucuuu                  uuugugu  uuguga cu uauag  c
  |||||  |||||||   |||||||| ||||||| || ||  ||||||||  ||||| |||||   ||||||                  |||||||  |||||| || |||||   
  uacac  ugaaaag   AAAGCUCU AGUUUGU CA Au  aaacuggc  uuaaa gggua   uagaaa                  aaauaua  aauauu ga guauu  u
aa     ca       uaA        C       -  A  uc        ua     u     cau      uuaaaaaaacuuuacuuu       ua      u  u     uu 

Annotation confidence Low

Genome context

JH138003.1: 403573-403790 [+]

Mature stu-miR8007b-5p

• Accession: MIMAT0030911
• Description: Solanum tuberosum stu-miR8007b-5p mature miRNA
• Sequence: 25 - AUUCAAACAAGUCUAUCUUUGACC - 48
• Evidence: experimental ; Illumina [1]

Mature stu-miR8007b-3p

• Accession: MIMAT0031197
• Description: Solanum tuberosum stu-miR8007b-3p mature miRNA
• Sequence: 180 - AAACUGUUUGACUCUCGAAAA - 200
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233