Stem-loop stu-MIR8016

Accession

MI0025822

Description

Solanum tuberosum stu-MIR8016 precursor miRNA

Literature search

1 open access papers mention stu-MIR8016
(1 sentences)

Sequence

4425 reads, 126.0 reads per million, 65 experiments

CAUGGUCUUUUCUUUCAAAAAUAUauuauauuaggaguugcuauauAUUUUUGAAUGGAAGGCCCAUGUG
(((((.((((((.(((((((((((((..((........))..))))))))))))).)))))).)))))..

Structure

--     U      U             ua  uua 
  CAUGG CUUUUC UUCAAAAAUAUau  ua   g
  ||||| |||||| |||||||||||||  ||    
  GUACC GGAAGG AAGUUUUUAuaua  gu   g
GU     C      U             uc  uga 

Annotation confidence High

Genome context

JH137804.1: 952075-952144 [+]

Mature stu-miR8016-5p

• Accession: MIMAT0058213
• Description: Solanum tuberosum stu-miR8016-5p mature miRNA
• Sequence: 1 - CAUGGUCUUUUCUUUCAAAAAUAU - 24
• Evidence: experimental ; unknown

Mature stu-miR8016-3p

• Accession: MIMAT0030913
• Description: Solanum tuberosum stu-miR8016-3p mature miRNA
• Sequence: 47 - AUUUUUGAAUGGAAGGCCCAUGUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233