Stem-loop stu-MIR7990b

Accession

MI0025827

Description

Solanum tuberosum stu-MIR7990b precursor miRNA

Sequence

348 reads, 12.0 reads per million, 57 experiments

aguuaaggacguuugaacUUUCCCAAAUUCACAGCUACCUUaaucuuuaagauacuGAAUUUUCAAAUGAUCGUAACUUU
(((((..((((((((((..(((..........((.((.(((((...))))).)))))))..)))))))).)).)))))..

Structure

--     ag  -        cU   CCAAAUUCAC  C  C     u 
  aguua  ga cguuugaa  UUC          AG UA CUUaa  
  |||||  || ||||||||  |||          || || ||||| c
  UCAAU  CU GUAAACUU  AAG          uc au gaauu  
UU     -G  A        UU   ----------  -  a     u 

Annotation confidence Low

Genome context

JH138071.1: 26038-26117 [+]

Mature stu-miR7990b-5p

• Accession: MIMAT0058214
• Description: Solanum tuberosum stu-miR7990b-5p mature miRNA
• Sequence: 19 - UUUCCCAAAUUCACAGCUACCUU - 41
• Evidence: experimental ; unknown

Mature stu-miR7990b-3p

• Accession: MIMAT0030918
• Description: Solanum tuberosum stu-miR7990b-3p mature miRNA
• Sequence: 57 - GAAUUUUCAAAUGAUCGUAACUUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233