Stem-loop stu-MIR7984d

Accession

MI0025837

Description

Solanum tuberosum stu-MIR7984d precursor miRNA

Literature search

1 open access papers mention stu-MIR7984d
(1 sentences)

Sequence

14045 reads, 492.0 reads per million, 83 experiments

AUCCGAACUUUGACCGAAAUUGcuauaacaauaccgaacuuugaaaaggacauuuuaccccugcacuauuuaauaguguauuuuaaagguauauaaauaguaguguguccaugugggcacauauauaccuuuaaaauacaCUAUUAAAUAGUGCAGGGGUAaaauguccuuuucaaaguucgguauuguuauagcaauuucggucaaaguucggauau
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((........((((((((....))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))..

Structure

--                                                                                              aaauagua        a 
  AUCCGAACUUUGACCGAAAUUGcuauaacaauaccgaacuuugaaaaggacauuuuaccccugcacuauuuaauaguguauuuuaaagguauau        gugugucc u
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||  
  uaggcuugaaacuggcuuuaacgauauuguuauggcuugaaacuuuuccuguaaaAUGGGGACGUGAUAAAUUAUCacauaaaauuuccauaua        uacacggg g
ua                                                                                              --------        u 

Annotation confidence Low

Genome context

JH138192.1: 420389-420606 [+]

Mature stu-miR7984d-5p

• Accession: MIMAT0030928
• Description: Solanum tuberosum stu-miR7984d-5p mature miRNA
• Sequence: 1 - AUCCGAACUUUGACCGAAAUUG - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR7984d-3p

• Accession: MIMAT0031204
• Description: Solanum tuberosum stu-miR7984d-3p mature miRNA
• Sequence: 141 - CUAUUAAAUAGUGCAGGGGUA - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233