Stem-loop stu-MIR7980b

Accession

MI0025839

Description

Solanum tuberosum stu-MIR7980b precursor miRNA

Literature search

1 open access papers mention stu-MIR7980b
(2 sentences)

Sequence

4238 reads, 131.0 reads per million, 76 experiments

guccaaacacugauuccaucucaugaucccauAUCAUGAUAUGGUAUCGCAUGuaggaauuuggucaugugauaccauaucacgcuaugaaaucauGAGAUGGAAUCAGUGUUUGGACAU
(((((((((((((((((((((((((((..((((.(.(((((((((((((((((............))))))))))))))))).).))))..)))))))))))))))))))))))))))..

Structure

--                           cc    U A                 uagga 
  guccaaacacugauuccaucucaugau  cauA C UGAUAUGGUAUCGCAUG     a
  |||||||||||||||||||||||||||  |||| | |||||||||||||||||      
  CAGGUUUGUGACUAAGGUAGAGuacua  guau g acuauaccauaguguac     u
UA                           aa    c c                 ugguu 

Annotation confidence Low

Genome context

JH138233.1: 14259-14378 [-]

Mature stu-miR7980b-5p

• Accession: MIMAT0031205
• Description: Solanum tuberosum stu-miR7980b-5p mature miRNA
• Sequence: 33 - AUCAUGAUAUGGUAUCGCAUG - 53
• Evidence: experimental ; Illumina [1]

Mature stu-miR7980b-3p

• Accession: MIMAT0030930
• Description: Solanum tuberosum stu-miR7980b-3p mature miRNA
• Sequence: 97 - GAGAUGGAAUCAGUGUUUGGACAU - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233