Stem-loop stu-MIR8029

Accession

MI0025842

Description

Solanum tuberosum stu-MIR8029 precursor miRNA

Sequence

626 reads, 16.0 reads per million, 53 experiments

uccaaaacaAGAAAAAAUGGUUCAAUUUUGcucuugaacuauucaaauuguccaauuuugaguaauuaaaggucaagauugAGCCAUUUUUCUUUGUUUUGGAGC
(((((((((((.((((((((((((((((((.((((....((((((((.........))))))))....)))).)))))))))))))))))).)))))))))))..

Structure

--           A                  c    gaac        uug 
  uccaaaacaAG AAAAAUGGUUCAAUUUUG ucuu    uauucaaa   u
  ||||||||||| |||||||||||||||||| ||||    ||||||||   c
  AGGUUUUGUUU UUUUUACCGAguuagaac ggaa    augaguuu   c
CG           C                  u    auua        uaa 

Annotation confidence Low

Genome context

JH138414.1: 61689-61793 [+]

Mature stu-miR8029-5p

• Accession: MIMAT0058219
• Description: Solanum tuberosum stu-miR8029-5p mature miRNA
• Sequence: 10 - AGAAAAAAUGGUUCAAUUUUG - 30
• Evidence: experimental ; unknown

Mature stu-miR8029-3p

• Accession: MIMAT0030933
• Description: Solanum tuberosum stu-miR8029-3p mature miRNA
• Sequence: 82 - AGCCAUUUUUCUUUGUUUUGGAGC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233