Stem-loop stu-MIR8034

Accession

MI0025853

Description

Solanum tuberosum stu-MIR8034 precursor miRNA

Sequence

1654 reads, 47.0 reads per million, 68 experiments

UAUGACAAACACUGCAAAAACUucauaaagagauaaaaacguaaaguauuccucuuuauuaaguggaacuuuuucuuacacuuuauaaaguguaagaaaaaauuacacuuuacaaagaggaauaauucacguuuuuaucuuuuuaugAAGCUUUUGCAAUGUUUGUCAUACa
(((((((((((.(((((((.((((((((((((((((((((((.((.(((((((((((...(((((..(.((((((((((((((....)))))))))))))).)..)))))...))))))))))).)).)))))))))))))))))))))).))))))).)))))))))))..

Structure

--           C       A                      a  g           auu     ga c              u 
  UAUGACAAACA UGCAAAA CUucauaaagagauaaaaacgu aa uauuccucuuu   aagug  a uuuuucuuacacuu a
  ||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||   |||||  | ||||||||||||||  
  AUACUGUUUGU ACGUUUU GAAguauuuuucuauuuuugca uu auaaggagaaa   uucac  u aaaaagaaugugaa u
aC           A       C                      c  a           cau     au a              a 

Annotation confidence Medium

Genome context

JH137935.1: 1256821-1256992 [-]

Mature stu-miR8034-5p

• Accession: MIMAT0030944
• Description: Solanum tuberosum stu-miR8034-5p mature miRNA
• Sequence: 1 - UAUGACAAACACUGCAAAAACU - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR8034-3p

• Accession: MIMAT0058221
• Description: Solanum tuberosum stu-miR8034-3p mature miRNA
• Sequence: 148 - AAGCUUUUGCAAUGUUUGUCAUAC - 171
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233