Stem-loop stu-MIR319

Accession

MI0025861

Description

Solanum tuberosum stu-MIR319 precursor miRNA

Literature search

14 open access papers mention stu-MIR319
(25 sentences)

Sequence

10721 reads, 334.0 reads per million, 63 experiments

aggaaacuguuuaguccaacccaagguggguuauuggaacugaucuuUGCUGCUGAAUCAUUGGCUCaugagcaugucaaagaagaugaauaacauccuggacauguucuugcuccaaugaugcaggagcugagcucgguuuuucacugccuuuucUUGGACUGAAGGGUUCCCUUC
(((.((((.((((((((((...(((((((......((((((((.(((.(((.(((.((((((((..((.(((((((((..((..((((.....)))))).))))))))).))..)))))))).))).))).))).))))))))...)))))))...)))))))))).)))).)))..

Structure

--   a    g          ccc       guuauu        u   U   G   A        CU  u         aa  aa    a 
  agg aacu uuuaguccaa   aaggugg      ggaacuga cuu GCU CUG AUCAUUGG  Ca gagcauguc  ag  gaug a
  ||| |||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||  |||| u
  UCC UUGG AAGUCAGGUU   uuccguc      uuuuggcu gag cga gac uaguaacc  gu cuuguacag  uc  cuac a
CU   C    G          cuu       ---acu        c   u   g   g        uc  u         -g  --    a 

Annotation confidence Low

Genome context

JH137816.1: 1868464-1868640 [+]

Mature stu-miR319-5p

• Accession: MIMAT0031219
• Description: Solanum tuberosum stu-miR319-5p mature miRNA
• Sequence: 48 - UGCUGCUGAAUCAUUGGCUC - 67
• Evidence: experimental ; Illumina [1]

Mature stu-miR319-3p

• Accession: MIMAT0030952
• Description: Solanum tuberosum stu-miR319-3p mature miRNA
• Sequence: 157 - UUGGACUGAAGGGUUCCCUUC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233