Stem-loop stu-MIR319

Accession

MI0025861

Description

Solanum tuberosum stu-MIR319 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

5 open access papers mention stu-MIR319
(10 sentences)

Sequence

AGGAAACUGUUUAGUCCAACCcaagguggguuauuggaacugaucuuugcugcugaaucauuggcucaugagcaugucaaagaagaugaauaacauccuggacauguucuugcuccaaugaugcaggagcugagcucgguuuuucacugccuuuucUUGGACUGAAGGGUUCCCUUC
(((.((((.((((((((((...(((((((......((((((((.(((.(((.(((.((((((((..((.(((((((((..((..((((.....)))))).))))))))).))..)))))))).))).))).))).))))))))...)))))))...)))))))))).)))).)))..

Structure

--   A    G          CCc       guuauu        u   u   g   a        cu  u         aa  aa    a 
  AGG AACU UUUAGUCCAA   aaggugg      ggaacuga cuu gcu cug aucauugg  ca gagcauguc  ag  gaug a
  ||| |||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||  |||| u
  UCC UUGG AAGUCAGGUU   uuccguc      uuuuggcu gag cga gac uaguaacc  gu cuuguacag  uc  cuac a
CU   C    G          cuu       ---acu        c   u   g   g        uc  u         -g  --    a 

Annotation confidence Not enough data

Genome context

JH137816.1: 1868464-1868640 [+]

Mature stu-miR319-5p

• Accession: MIMAT0031219
• Description: Solanum tuberosum stu-miR319-5p mature miRNA
• Sequence: 1 - AGGAAACUGUUUAGUCCAACC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR319-3p

• Accession: MIMAT0030952
• Description: Solanum tuberosum stu-miR319-3p mature miRNA
• Sequence: 157 - UUGGACUGAAGGGUUCCCUUC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233