miRBase entry: stu-MIR8047

Stem-loop stu-MIR8047


Accession
MI0025871
Description
Solanum tuberosum stu-MIR8047 precursor miRNA


Sequence

680 reads, 22.0 reads per million, 65 experiments
CCAUUUUUUCGAAAUUAGACCcgugguuugaauaguaguuuuggauuauaaacuucagaccacuggUCUAGUUUCGAAAAAAUUGuc
..(((((((((((((((((((.(((((((((.....(((((........)))))))))))))).)))))))))))))))))))....

Structure
--CC                   c         auagu     ugg 
    AUUUUUUCGAAAUUAGACC gugguuuga     aguuu   a
    ||||||||||||||||||| |||||||||     |||||    
    UAAAAAAGCUUUGAUCUgg caccagacu     ucaaa   u
cuGU                   u         -----     uau 


Annotation confidence High
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Genome context
JH137928.1: 986410-986496 [-]

Database links

Mature stu-miR8047-5p

Accession MIMAT0030962
Description Solanum tuberosum stu-miR8047-5p mature miRNA
Sequence 1 - CCAUUUUUUCGAAAUUAGACC - 21
Evidence experimental
Illumina [1]

Mature stu-miR8047-3p

Accession MIMAT0058225
Description Solanum tuberosum stu-miR8047-3p mature miRNA
Sequence 67 - UCUAGUUUCGAAAAAAUUG - 85
Evidence experimental
unknown

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233