Stem-loop stu-MIR399g

Accession

MI0025879

Description

Solanum tuberosum stu-MIR399g precursor miRNA

Literature search

4 open access papers mention stu-MIR399g
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaguuugucacacauuucagcugacaCGCCAAAGGGGAGCUGCCCUA
((((..((((((.(((((.((((((((((...)))....))))).)).))))).))))))..))))..

Structure

--    UA      A     A  -     ----   c 
  GGGC  CUCUCU UUGGC UG caguu    ugu  
  ||||  |||||| ||||| || |||||    ||| a
  CCCG  GAGGGG AACCG ac gucga    aca  
AU    UC      A     C  a     cuuu   c 

Annotation confidence Not enough data

Genome context

JH137943.1: 1312547-1312614 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR399g

Mature stu-miR399g-5p

• Accession: MIMAT0030970
• Description: Solanum tuberosum stu-miR399g-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399g-3p

• Accession: MIMAT0031233
• Description: Solanum tuberosum stu-miR399g-3p mature miRNA
• Sequence: 48 - CGCCAAAGGGGAGCUGCCCUA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233