Stem-loop stu-MIR5303j

Accession

MI0025926

Description

Solanum tuberosum stu-MIR5303j precursor miRNA

Literature search

3 open access papers mention stu-MIR5303j
(7 sentences)

Sequence

gcucggacuauucaaauugcugccccacccuguguaagauccuccaaaaaugacuacuuuugaaggauuaaacacgcauccggcAAUAUUUUUGAAGAGUCUGAGCAA
(((((((((.((((((....((((......(((((..((((((.(((((........))))).))))))..))))).....)))).....)))))).)))))))))..

Structure

--         a      -uugc    ccaccc     aa      c     aug 
  gcucggacu uucaaa     ugcc      ugugu  gauccu caaaa   a
  ||||||||| ||||||     ||||      |||||  |||||| |||||    
  CGAGUCUGA AAGUUU     Acgg      gcaca  uuagga guuuu   c
AA         G      UUAUA    -ccuac     aa      a     cau 

Annotation confidence Not enough data

Genome context

JH137863.1: 893617-893724 [+]

Mature stu-miR5303j

• Accession: MIMAT0031241
• Description: Solanum tuberosum stu-miR5303j mature miRNA
• Sequence: 85 - AAUAUUUUUGAAGAGUCUGAGCAA - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233