Stem-loop stu-MIR5303g

Accession

MI0025927

Description

Solanum tuberosum stu-MIR5303g precursor miRNA

Literature search

3 open access papers mention stu-MIR5303g
(6 sentences)

Sequence

4403 reads, 136.0 reads per million, 82 experiments

ugcucggacccucaaaagauguucUCGGAUCCUCCAAAAAUAcauagcuuuuggaggauccgacacguagAUAUUUUUGAAGAGUCUGAGCAAC
(((((((((.((..(((((((((.(((((((((((((((.........)))))))))))))))......)))))))))..)).)))))))))..

Structure

--         c  ca         -----c               AUA 
  ugcucggac cu  aaagauguu      UCGGAUCCUCCAAAA   c
  ||||||||| ||  |||||||||      |||||||||||||||   a
  ACGAGUCUG GA  UUUUUAUAg      agccuaggagguuuu   u
CA         A  AG         augcac               cga 

Annotation confidence Low

Genome context

JH137902.1: 155453-155546 [+]

Mature stu-miR5303g-5p

• Accession: MIMAT0058226
• Description: Solanum tuberosum stu-miR5303g-5p mature miRNA
• Sequence: 25 - UCGGAUCCUCCAAAAAUA - 42
• Evidence: experimental ; unknown

Mature stu-miR5303g-3p

• Accession: MIMAT0031242
• Description: Solanum tuberosum stu-miR5303g-3p mature miRNA
• Sequence: 71 - AUAUUUUUGAAGAGUCUGAGCAAC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233