Stem-loop stu-MIR5303h

Accession

MI0025928

Description

Solanum tuberosum stu-MIR5303h precursor miRNA

Literature search

3 open access papers mention stu-MIR5303h
(6 sentences)

Sequence

3348 reads, 114.0 reads per million, 83 experiments

gcucaaacucuccaaaauuguugccgcacucGUGUCGGAUCCUCCAAAAaagagcacuacuuuugguggauccaacacacucuucAACAUUUUUGAAGAGUCUGAGCAA
(((((.(((((.(((((.(((((........((((.((((((.((((((...........)))))).)))))).))))......))))).))))).))))).)))))..

Structure

--     a     c     u     ccgcacuc    C      U      aaga 
  gcuca acucu caaaa uguug        GUGU GGAUCC CCAAAA    g
  ||||| ||||| ||||| |||||        |||| |||||| ||||||    c
  CGAGU UGAGA GUUUU ACAAc        caca ccuagg gguuuu    a
AA     C     A     U     --uucuca    a      u      cauc 

Annotation confidence Low

Genome context

JH138058.1: 671120-671228 [-]

Mature stu-miR5303h-5p

• Accession: MIMAT0058227
• Description: Solanum tuberosum stu-miR5303h-5p mature miRNA
• Sequence: 32 - GUGUCGGAUCCUCCAAAA - 49
• Evidence: experimental ; unknown

Mature stu-miR5303h-3p

• Accession: MIMAT0031243
• Description: Solanum tuberosum stu-miR5303h-3p mature miRNA
• Sequence: 86 - AACAUUUUUGAAGAGUCUGAGCAA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233