Stem-loop stu-MIR5303i

Accession

MI0025929

Description

Solanum tuberosum stu-MIR5303i precursor miRNA

Literature search

3 open access papers mention stu-MIR5303i
(6 sentences)

Sequence

4304 reads, 120.0 reads per million, 79 experiments

uacucguACUCUCCAAAAAUGUUGUcucacccgugucgaauucaaaaauacacuauuuuuggaguauccgacgcacaaccuucgAUAUUUUUGAAGAGUCUGAGCAAC
..((((.(((((.(((((((((((........((((((..((((((((((...)))))))))).....))))))........))))))))))).))))).))))....

Structure

--ua    u     C           Ucucaccc      ---aa          c 
    cucg ACUCU CAAAAAUGUUG        gugucg     uucaaaaaua  
    |||| ||||| |||||||||||        ||||||     |||||||||| a
    GAGU UGAGA GUUUUUAUAgc        cgcagc     agguuuuuau  
CAAC    C     A           uuccaaca      cuaug          c 

Annotation confidence Low

Genome context

JH138109.1: 42382-42489 [+]

Mature stu-miR5303i-5p

• Accession: MIMAT0058228
• Description: Solanum tuberosum stu-miR5303i-5p mature miRNA
• Sequence: 8 - ACUCUCCAAAAAUGUUGU - 25
• Evidence: experimental ; unknown

Mature stu-miR5303i-3p

• Accession: MIMAT0031244
• Description: Solanum tuberosum stu-miR5303i-3p mature miRNA
• Sequence: 85 - AUAUUUUUGAAGAGUCUGAGCAAC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233