Stem-loop stu-MIR166b

Accession

MI0025933

Description

Solanum tuberosum stu-MIR166b precursor miRNA

Literature search

7 open access papers mention stu-MIR166b
(19 sentences)

Sequence

10482283 reads, 277519.0 reads per million, 83 experiments

GGAAUGUUGUUUGGUUCGAAAUcauucaacaaauuaaaguccaucucgaugaucaaugaauugaaugauuUCGGACCAGGCUUCAUUCCUC
((((((..(((((((((((((((((((((...(((...(((......)))....)))...)))))))))))))))))))))..))))))..

Structure

--      UU                     caa   -aaa   ca 
  GGAAUG  GUUUGGUUCGAAAUcauucaa   auu    guc  u
  ||||||  |||||||||||||||||||||   |||    |||   
  CCUUAC  CGGACCAGGCUuuaguaaguu   uaa    uag  c
CU      UU                     aag   cuag   cu 

Annotation confidence High

Genome context

JH137916.1: 535831-535921 [-]

Mature stu-miR166b-5p

• Accession: MIMAT0058229
• Description: Solanum tuberosum stu-miR166b-5p mature miRNA
• Sequence: 1 - GGAAUGUUGUUUGGUUCGAAAU - 22
• Evidence: experimental ; unknown

Mature stu-miR166b-3p

• Accession: MIMAT0031251
• Description: Solanum tuberosum stu-miR166b-3p mature miRNA
• Sequence: 71 - UCGGACCAGGCUUCAUUCCUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233