Stem-loop stu-MIR395b

Accession

MI0025940

Description

Solanum tuberosum stu-MIR395b precursor miRNA

Literature search

4 open access papers mention stu-MIR395b
(9 sentences)

Sequence

7248 reads, 354.0 reads per million, 73 experiments

GUUCCCUUGACCACUUCAUGAgggauuaauuucuucauuuuuguugcccugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..((((..((((............))))))))..))))))).))))))))))..

Structure

--          C       UG    au    uucuu 
  GUUCCCUUGA CACUUCA  Aggg  uaau     c
  |||||||||| |||||||  ||||  ||||      
  CAAGGGGGUU GUGAAGU  uccc  guug     a
CU          U       Cg    --    uuuuu 

Annotation confidence High

Genome context

JH137931.1: 852079-852150 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395b

Mature stu-miR395b-5p

• Accession: MIMAT0058231
• Description: Solanum tuberosum stu-miR395b-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAUGA - 21
• Evidence: experimental ; unknown

Mature stu-miR395b-3p

• Accession: MIMAT0031263
• Description: Solanum tuberosum stu-miR395b-3p mature miRNA
• Sequence: 52 - CUGAAGUGUUUGGGGGAACUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233