Stem-loop stu-MIR395c

Accession

MI0025941

Description

Solanum tuberosum stu-MIR395c precursor miRNA

Literature search

3 open access papers mention stu-MIR395c
(4 sentences)

Sequence

7394 reads, 348.0 reads per million, 75 experiments

GUUCCCUUGACCACUUCAUGAgggcuuaauuacuucauuuuugauguccugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..(((((((((...........)))).)))))..))))))).))))))))))..

Structure

--          C       UG     -    uuac 
  GUUCCCUUGA CACUUCA  Agggc uuaa    u
  |||||||||| |||||||  ||||| ||||    u
  CAAGGGGGUU GUGAAGU  uccug aguu    c
CU          U       Cg     u    uuua 

Annotation confidence High

Genome context

JH138105.1: 628404-628475 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395c

Mature stu-miR395c-5p

• Accession: MIMAT0058232
• Description: Solanum tuberosum stu-miR395c-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAUGA - 21
• Evidence: experimental ; unknown

Mature stu-miR395c-3p

• Accession: MIMAT0031264
• Description: Solanum tuberosum stu-miR395c-3p mature miRNA
• Sequence: 52 - CUGAAGUGUUUGGGGGAACUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233