Stem-loop stu-MIR395d

Accession

MI0025942

Description

Solanum tuberosum stu-MIR395d precursor miRNA

Literature search

3 open access papers mention stu-MIR395d
(4 sentences)

Sequence

6438 reads, 331.0 reads per million, 71 experiments

GUUCCCUUGACCACUUCAUuaggaauuaauuacuucauuuuuaauguccuaCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((.((((((((((...........))))).))))).))))))).))))))))))..

Structure

--          C       U     -     uuac 
  GUUCCCUUGA CACUUCA uagga auuaa    u
  |||||||||| ||||||| ||||| |||||    u
  CAAGGGGGUU GUGAAGU auccu uaauu    c
CU          U       C     g     uuua 

Annotation confidence High

Genome context

JH138105.1: 629597-629668 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395d

Mature stu-miR395d-5p

• Accession: MIMAT0058233
• Description: Solanum tuberosum stu-miR395d-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAU - 19
• Evidence: experimental ; unknown

Mature stu-miR395d-3p

• Accession: MIMAT0031265
• Description: Solanum tuberosum stu-miR395d-3p mature miRNA
• Sequence: 52 - CUGAAGUGUUUGGGGGAACUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233