Stem-loop stu-MIR395f

Accession

MI0025944

Description

Solanum tuberosum stu-MIR395f precursor miRNA

Literature search

3 open access papers mention stu-MIR395f
(4 sentences)

Sequence

7322 reads, 347.0 reads per million, 75 experiments

GUUCCCUUGACCACUUCAUGAgggcuuacuucguuguuugaagcccuaCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((..(((((((((......))...)))))))..))))))).))))))))))..

Structure

--          C       UG       ---  uu 
  GUUCCCUUGA CACUUCA  Agggcuu   ac  c
  |||||||||| |||||||  |||||||   ||   
  CAAGGGGGUU GUGAAGU  ucccgaa   ug  g
CU          U       Ca       guu  uu 

Annotation confidence High

Genome context

JH138865.1: 14956-15024 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395f

Mature stu-miR395f-5p

• Accession: MIMAT0058234
• Description: Solanum tuberosum stu-miR395f-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAUGA - 21
• Evidence: experimental ; unknown

Mature stu-miR395f-3p

• Accession: MIMAT0031267
• Description: Solanum tuberosum stu-miR395f-3p mature miRNA
• Sequence: 49 - CUGAAGUGUUUGGGGGAACUC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233