Stem-loop stu-MIR395g

Accession

MI0025945

Description

Solanum tuberosum stu-MIR395g precursor miRNA

Literature search

3 open access papers mention stu-MIR395g
(4 sentences)

Sequence

6539 reads, 324.0 reads per million, 73 experiments

GUUCCCUUGACCACUUCAUcaugagggguugauaucuucuuuuuugaugucuugCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((...(((((.(((((...........))))).))))).))))))).))))))))))..

Structure

--          C       Uca     g     uauc 
  GUUCCCUUGA CACUUCA   ugagg guuga    u
  |||||||||| |||||||   ||||| |||||    u
  CAAGGGGGUU GUGAAGU   guucu uaguu    c
CU          U       --C     g     uuuu 

Annotation confidence High

Genome context

JH138865.1: 20451-20525 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395g

Mature stu-miR395g-5p

• Accession: MIMAT0058235
• Description: Solanum tuberosum stu-miR395g-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAU - 19
• Evidence: experimental ; unknown

Mature stu-miR395g-3p

• Accession: MIMAT0031268
• Description: Solanum tuberosum stu-miR395g-3p mature miRNA
• Sequence: 55 - CUGAAGUGUUUGGGGGAACUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233