Stem-loop stu-MIR395h

Accession

MI0025946

Description

Solanum tuberosum stu-MIR395h precursor miRNA

Literature search

3 open access papers mention stu-MIR395h
(4 sentences)

Sequence

7385 reads, 338.0 reads per million, 75 experiments

GUUCCCUUGACCACUUCAUGAugguuuaauaacuucauuuuuugugcccucCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((.((.(((.(((............))).))).)).))))))).))))))))))..

Structure

--          C       U  u   u   uaacu 
  GUUCCCUUGA CACUUCA GA ggu uaa     u
  |||||||||| ||||||| || ||| |||      
  CAAGGGGGUU GUGAAGU cu ccg guu     c
CU          U       C  c   u   uuuua 

Annotation confidence High

Genome context

JH139101.1: 2286-2357 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from stu-MIR395h

Mature stu-miR395h-5p

• Accession: MIMAT0058236
• Description: Solanum tuberosum stu-miR395h-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAUGA - 21
• Evidence: experimental ; unknown

Mature stu-miR395h-3p

• Accession: MIMAT0031269
• Description: Solanum tuberosum stu-miR395h-3p mature miRNA
• Sequence: 52 - CUGAAGUGUUUGGGGGAACUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233