Stem-loop stu-MIR395j

Accession

MI0025948

Description

Solanum tuberosum stu-MIR395j precursor miRNA

Literature search

4 open access papers mention stu-MIR395j
(9 sentences)

Sequence

6440 reads, 331.0 reads per million, 71 experiments

GUUCCCUUGACCACUUCAUuaggaauuaauuacuucauuuuuaauguccuaCUGAAGUGUUUGGGGGAACUC
((((((((((.(((((((.((((((((((...........))))).))))).))))))).))))))))))..

Structure

--          C       U     -     uuac 
  GUUCCCUUGA CACUUCA uagga auuaa    u
  |||||||||| ||||||| ||||| |||||    u
  CAAGGGGGUU GUGAAGU auccu uaauu    c
CU          U       C     g     uuua 

Annotation confidence High

Genome context

JH138918.1: 6984-7055 [-]

Mature stu-miR395j-5p

• Accession: MIMAT0058238
• Description: Solanum tuberosum stu-miR395j-5p mature miRNA
• Sequence: 1 - GUUCCCUUGACCACUUCAU - 19
• Evidence: experimental ; unknown

Mature stu-miR395j-3p

• Accession: MIMAT0031271
• Description: Solanum tuberosum stu-miR395j-3p mature miRNA
• Sequence: 52 - CUGAAGUGUUUGGGGGAACUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233