Stem-loop stu-MIR319b

Accession

MI0025951

Description

Solanum tuberosum stu-MIR319b precursor miRNA

Sequence

353972 reads, 8645.0 reads per million, 80 experiments

gAGCUCCUUUCAGGCCAAGACCgagggacgaggagcggcaugagcugccuagucaugcauauugguuaaccuuaacaaacauauauauagaguguuaagaauaaccaguugcaugccaagggagcaacuacuuccgcuaacuugucucacuuaUUGGACUGAAGGGAGCUCCU
(((((((((((((.((((......((((((((.(((((.....(((.(((.(.((((((.((((((((..(((((((..(.........)..)))))))..)))))))))))))).).))).)))........)))))..)))))))).....)))).)))))))))))))..

Structure

--             G    GACCga        -g     ---cauga   g   a u      u        ac       aa aua 
  gAGCUCCUUUCAG CCAA      gggacgag  agcgg        gcu ccu g caugca auugguua  cuuaaca  c   u
  ||||||||||||| ||||      ||||||||  |||||        ||| ||| | |||||| ||||||||  |||||||  |   a
  CUCGAGGGAAGUC GGUU      cucuguuc  ucgcc        cga gga c guacgu ugaccaau  gaauugu  g   u
UC             A    -auuca        aa     uucaucaa   g   a c      -        aa       ga aua 

Annotation confidence High

Genome context

JH137816.1: 2292041-2292213 [-]

Mature stu-miR319b-5p

• Accession: MIMAT0058239
• Description: Solanum tuberosum stu-miR319b-5p mature miRNA
• Sequence: 2 - AGCUCCUUUCAGGCCAAGACC - 22
• Evidence: experimental ; unknown

Mature stu-miR319b-3p

• Accession: MIMAT0031276
• Description: Solanum tuberosum stu-miR319b-3p mature miRNA
• Sequence: 154 - UUGGACUGAAGGGAGCUCCU - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233