Stem-loop stu-MIR319a

Accession

MI0025952

Description

Solanum tuberosum stu-MIR319a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention stu-MIR319a
(11 sentences)

Sequence

AGAGCUUUCUUCGGUCCACACauggggggcgauaggguucaauuugcugccgacucauucauccaaauguugaggucuugauagucgaaugccaccucagcaacugagugaaugaagcgggaguacaaguugagucuugagcuuccuguacUUGGACUGAAGGGAGCUCCCU
.(((((((((((((((((...(((((((((..((((((((((((((((.(((..((((((((.((..(((((((((.((((...)))).....)))))))))..)).))))))))..))).))..)))))))))))))).)))))))))...)))))))))))))))))...

Structure

--A                 CAC         ga              --  g   ac        c  aa         ----c    u 
   GAGCUUUCUUCGGUCCA   auggggggc  uaggguucaauuug  cu ccg  ucauucau ca  uguugaggu     uuga  
   |||||||||||||||||   |||||||||  ||||||||||||||  || |||  |||||||| ||  |||||||||     |||| a
   CUCGAGGGAAGUCAGGU   uguccuucg  guucugaguugaac  ga ggc  aguaagug gu  acgacucca     agcu  
UCC                 Uca         -a              au  g   ga        a  ca         ccgua    g 

Annotation confidence Not enough data

Genome context

JH137840.1: 1381096-1381267 [+]

Mature stu-miR319a-5p

• Accession: MIMAT0031277
• Description: Solanum tuberosum stu-miR319a-5p mature miRNA
• Sequence: 1 - AGAGCUUUCUUCGGUCCACAC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR319a-3p

• Accession: MIMAT0031278
• Description: Solanum tuberosum stu-miR319a-3p mature miRNA
• Sequence: 152 - UUGGACUGAAGGGAGCUCCCU - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233