Stem-loop stu-MIR162a

Accession

MI0025953

Description

Solanum tuberosum stu-MIR162a precursor miRNA

Literature search

3 open access papers mention stu-MIR162a
(5 sentences)

Sequence

1728513 reads, 34987.0 reads per million, 83 experiments

GGAGGCAGCGGUUCAUCGAUCUGuucccugaaaagcgauaaauauagcaacaggaagcgaUCGAUAAACCUCUGCAUCCAG
(((.((((.((((.(((((((.(((.((((....((..........))..)))).)))))))))).)))).)))).)))..

Structure

--   G    C    C       U   c    aaaa  gaua 
  GGA GCAG GGUU AUCGAUC Guu ccug    gc    a
  ||| |||| |||| ||||||| ||| ||||    ||     
  CCU CGUC CCAA UAGCUag cga ggac    cg    a
GA   A    U    A       -   a    --aa  auau 

Annotation confidence High

Genome context

JH137851.1: 1030741-1030821 [+]

Mature stu-miR162a-5p

• Accession: MIMAT0031279
• Description: Solanum tuberosum stu-miR162a-5p mature miRNA
• Sequence: 1 - GGAGGCAGCGGUUCAUCGAUCUG - 23
• Evidence: experimental ; Illumina [1]

Mature stu-miR162a-3p

• Accession: MIMAT0031280
• Description: Solanum tuberosum stu-miR162a-3p mature miRNA
• Sequence: 61 - UCGAUAAACCUCUGCAUCCAG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233