Stem-loop stu-MIR162b

Accession

MI0025954

Description

Solanum tuberosum stu-MIR162b precursor miRNA

Literature search

1 open access papers mention stu-MIR162b
(5 sentences)

Sequence

GGAGGCAGCGGUUCAUCGAUCuguucccugaaagcugaauauauaugcaaaaauacagcaaaaggaaccgaUCGAUAAACCUCUGCAUCCAG
(((.((((.((((.(((((((.(((((......((((..................))))....))))).))))))).)))).)))).)))..

Structure

--   G    C    C       u     cugaaa    aauauaua 
  GGA GCAG GGUU AUCGAUC guucc      gcug        u
  ||| |||| |||| ||||||| |||||      ||||         
  CCU CGUC CCAA UAGCUag caagg      cgac        g
GA   A    U    A       c     --aaaa    auaaaaac 

Annotation confidence Not enough data

Genome context

JH137971.1: 147916-148007 [+]

Mature stu-miR162b-5p

• Accession: MIMAT0031281
• Description: Solanum tuberosum stu-miR162b-5p mature miRNA
• Sequence: 1 - GGAGGCAGCGGUUCAUCGAUC - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR162b-3p

• Accession: MIMAT0031282
• Description: Solanum tuberosum stu-miR162b-3p mature miRNA
• Sequence: 72 - UCGAUAAACCUCUGCAUCCAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233