Stem-loop stu-MIR160a

Accession

MI0025955

Description

Solanum tuberosum stu-MIR160a precursor miRNA

Literature search

8 open access papers mention stu-MIR160a
(25 sentences)

Sequence

223862 reads, 3864.0 reads per million, 80 experiments

UGCCUGGCUCCCUGUAUGCCAUuugcaaagcucaccguaauauaucgaugggccuuguugaaugGCGUAUGAGGAGCCAAGCAUA
(((.(((((((.((((((((((((((((.(((((.((........)).))))).))).))))))))))))).))))))).)))..

Structure

--   C       C             -   a     c  uaa 
  UGC UGGCUCC UGUAUGCCAUuug caa gcuca cg   u
  ||| ||||||| ||||||||||||| ||| ||||| ||    
  ACG ACCGAGG GUAUGCGguaagu guu cgggu gc   a
AU   A       A             u   c     a  uau 

Annotation confidence High

Genome context

JH137863.1: 504871-504955 [+]

Mature stu-miR160a-5p

• Accession: MIMAT0031283
• Description: Solanum tuberosum stu-miR160a-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCAU - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR160a-3p

• Accession: MIMAT0031284
• Description: Solanum tuberosum stu-miR160a-3p mature miRNA
• Sequence: 65 - GCGUAUGAGGAGCCAAGCAUA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233