Stem-loop stu-MIR160b

Accession

MI0025956

Description

Solanum tuberosum stu-MIR160b precursor miRNA

Literature search

3 open access papers mention stu-MIR160b
(9 sentences)

Sequence

37740 reads, 871.0 reads per million, 78 experiments

UGCCUGGCUCCCUGUAUGCCAcacacuuucaccaauucuuugauugacugaucagugggugGCGUGCGAGGAGCCAAGCAUA
(((.(((((((.((((((((((.((((.(((.(((((....)))))..)))..)))).)))))))))).))))))).)))..

Structure

--   C       C          a    -u   -c     c 
  UGC UGGCUCC UGUAUGCCAc cacu  uca  caauu u
  ||| ||||||| |||||||||| ||||  |||  |||||  
  ACG ACCGAGG GCGUGCGgug guga  agu  guuag u
AU   A       A          g    cu   ca     u 

Annotation confidence High

Genome context

JH138023.1: 757259-757340 [-]

Mature stu-miR160b-5p

• Accession: MIMAT0031285
• Description: Solanum tuberosum stu-miR160b-5p mature miRNA
• Sequence: 1 - UGCCUGGCUCCCUGUAUGCCA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR160b-3p

• Accession: MIMAT0058240
• Description: Solanum tuberosum stu-miR160b-3p mature miRNA
• Sequence: 62 - GCGUGCGAGGAGCCAAGCAUA - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233