Stem-loop stu-MIR172b

Accession

MI0025957

Description

Solanum tuberosum stu-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172b
(50 sentences)

Sequence

GCAGCACCAUCAAGAUUCACAuagaaaauauggacuaugaaaugaaauaugcccaauuuuugaauacaugAGAAUCUUGAUGAUGCUGCAU
((((((.(((((((((((.(((.((((((.(((.((((........))).).)))))))))......))).))))))))))).))))))..

Structure

--      C           A   -----a      a   a -   gaa 
  GCAGCA CAUCAAGAUUC CAu      gaaaau ugg c uau   a
  |||||| ||||||||||| |||      |||||| ||| | |||    
  CGUCGU GUAGUUCUAAG gua      uuuuua acc g aua   u
UA      A           A   cauaag      -   c u   aag 

Annotation confidence Not enough data

Genome context

JH137863.1: 779979-780069 [-]

Mature stu-miR172b-5p

• Accession: MIMAT0031286
• Description: Solanum tuberosum stu-miR172b-5p mature miRNA
• Sequence: 1 - GCAGCACCAUCAAGAUUCACA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR172b-3p

• Accession: MIMAT0031287
• Description: Solanum tuberosum stu-miR172b-3p mature miRNA
• Sequence: 71 - AGAAUCUUGAUGAUGCUGCAU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233