Stem-loop stu-MIR172c

Accession

MI0025958

Description

Solanum tuberosum stu-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

10 open access papers mention stu-MIR172c
(52 sentences)

Sequence

AGCAUCUUCAAGAUUCACAuagauuuauauaauauauagaguuccacgauggggugaaagugauuaauuaauauuaauuaauuaauuugcuccuauauauuggcucuauuaauuauuuuugaugugAGAAUCUUGAUGAUGCUGC
((((((.(((((((((.((((.......(((((..((((((((.....((((((((((..((((((((((....)))))))))).))))).))))).....))))))))..)))))......)))).))))))))).))))))..

Structure

--      U         A    gauuuau     au        ccacg     -     ag          a 
  AGCAUC UCAAGAUUC CAua       auaau  auagaguu     auggg gugaa  ugauuaauua u
  |||||| ||||||||| ||||       |||||  ||||||||     ||||| |||||  ||||||||||  
  UCGUAG AGUUCUAAG gugu       uauua  uaucucgg     uaucc cguuu  auuaauuaau a
CG      U         A    -aguuuu     au        uuaua     u     -a          u 

Annotation confidence Not enough data

Genome context

JH137874.1: 229149-229293 [-]

Mature stu-miR172c-5p

• Accession: MIMAT0031288
• Description: Solanum tuberosum stu-miR172c-5p mature miRNA
• Sequence: 1 - AGCAUCUUCAAGAUUCACA - 19
• Evidence: experimental ; Illumina [1]

Mature stu-miR172c-3p

• Accession: MIMAT0031289
• Description: Solanum tuberosum stu-miR172c-3p mature miRNA
• Sequence: 127 - AGAAUCUUGAUGAUGCUGC - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233