Stem-loop stu-MIR172a

Accession

MI0025959

Description

Solanum tuberosum stu-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

12 open access papers mention stu-MIR172a
(52 sentences)

Sequence

GUAGCAUAAUCAAGAUUCACAugaaaaguugcaaauuuguuauauaauugaugaaauuaauggcuagcuauuugaaauucaugAGAAUCUUGAUGAUGCUGCAU
(((((((.((((((((((.(((((...(((.(((((..(((((.(((((.....)))))))))).....))))).)))))))).)))))))))).)))))))..

Structure

--       A          A     aaa   g     ---uu     a     g 
  GUAGCAU AUCAAGAUUC CAuga   guu caaau     guuau uaauu a
  ||||||| |||||||||| |||||   ||| |||||     ||||| ||||| u
  CGUCGUA UAGUUCUAAG guacu   uaa guuua     cggua auuaa g
UA       G          A     ---   a     ucgau     -     a 

Annotation confidence Not enough data

Genome context

JH137880.1: 29806-29909 [-]

Mature stu-miR172a-5p

• Accession: MIMAT0031290
• Description: Solanum tuberosum stu-miR172a-5p mature miRNA
• Sequence: 1 - GUAGCAUAAUCAAGAUUCACA - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR172a-3p

• Accession: MIMAT0031291
• Description: Solanum tuberosum stu-miR172a-3p mature miRNA
• Sequence: 84 - AGAAUCUUGAUGAUGCUGCAU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233