Stem-loop stu-MIR172d

Accession

MI0025960

Description

Solanum tuberosum stu-MIR172d precursor miRNA

Literature search

11 open access papers mention stu-MIR172d
(54 sentences)

Sequence

29200 reads, 869.0 reads per million, 80 experiments

GGAGCAUCAUCAAGAUUCACAUagcuauauuagggcuuuuauaauuuuuaaaagcccuaugacgaugugugGGAAUCUUGAUGAUGCUGCAg
(.((((((((((((((((.((((.......(((((((((((.......)))))))))))........)))).)))))))))))))))).)..

Structure

-- G                A    -gcuauau           ua 
  G AGCAUCAUCAAGAUUC CAUa        uagggcuuuua  a
  | |||||||||||||||| ||||        |||||||||||  u
  C UCGUAGUAGUUCUAAG gugu        aucccgaaaau  u
gA G                G    guagcagu           uu 

Annotation confidence High

Genome context

JH137992.1: 672078-672169 [+]

Mature stu-miR172d-5p

• Accession: MIMAT0031292
• Description: Solanum tuberosum stu-miR172d-5p mature miRNA
• Sequence: 1 - GGAGCAUCAUCAAGAUUCACAU - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR172d-3p

• Accession: MIMAT0031293
• Description: Solanum tuberosum stu-miR172d-3p mature miRNA
• Sequence: 72 - GGAAUCUUGAUGAUGCUGCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233