Stem-loop stu-MIR172e

Accession

MI0025961

Description

Solanum tuberosum stu-MIR172e precursor miRNA

Literature search

10 open access papers mention stu-MIR172e
(50 sentences)

Sequence

286947 reads, 7598.0 reads per million, 83 experiments

GCAACAUCAUCAAGAUUCACAUaaaauagaaauaauguggaguagaaaaaaaaauaaaguugcuucuaaauuaugucuccauauuauuauuuuuuugaaaaugAGAAUCUUGAUGAUGCUGCAU
(((.((((((((((((((.(((((((.((.(((((((((((((((((..((........))..)))))........)))))))))))).)).))))....))).)))))))))))))).)))..

Structure

--   A              A   ----    u  a            --------     aa  aaa 
  GCA CAUCAUCAAGAUUC CAU    aaaa ag aauaauguggag        uagaa  aa   u
  ||| |||||||||||||| |||    |||| || ||||||||||||        |||||  ||    
  CGU GUAGUAGUUCUAAG gua    uuuu uu uuauuauaccuc        aucuu  uu   a
UA   C              A   aaag    u  a            uguauuaa     cg  gaa 

Annotation confidence High

Genome context

JH138154.1: 115358-115481 [-]

Mature stu-miR172e-5p

• Accession: MIMAT0031294
• Description: Solanum tuberosum stu-miR172e-5p mature miRNA
• Sequence: 1 - GCAACAUCAUCAAGAUUCACAU - 22
• Evidence: experimental ; Illumina [1]

Mature stu-miR172e-3p

• Accession: MIMAT0031295
• Description: Solanum tuberosum stu-miR172e-3p mature miRNA
• Sequence: 104 - AGAAUCUUGAUGAUGCUGCAU - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233